Tag Archives: Science

prions, mad cows and memes

Years ago, when I was in school, there were two sources of transmissible disease: bacteria an viruses. This idea was so well entrenched that it was very hard to suggest that there might be a third category. Of course, congenital disease and poisons cause disease, too, but these are nottransmissible. In the last 10 years, a new kind of disease-causing element was isolated: the prion. Even 5 years ago it was a contentious issue, but my sense of the landscape is that the consensus has been reached: there are proteins that mis-form and then cause other proteins to mis-form.

It’s known that these proteins get from one animal to another through cannibalism. If a mad cow eats another mad cow, it spreads the disease. How the mis-folded proteins get from the gut to the brain remains a mystery as best I have heard. I’d be really interested to learn of new findings in that area. In any case, there were some rumors in 2004 that there might be a more virulent form of prion disease in caribou, but I never heard any more about it. Interesting trivia, prions and some spider silk proteins are both amyloids.

I ramble on about this to illustrate a point: extremely unlikely things (flukes) can have a strong impact if they are in an environment that is “propagative”. I’ll illustrate with a flower analogy then talk about prions again. Let’s say I have a hundred acres of fresh, beautiful, irrigated, tilled soil. It’s ready for seed, but it’s in the middle of a desert and there are no seeds. It’s isolated. The event of a single seed (the size of a grain of sand) falling in that huge hundred acres would be impossible to notice. If you looked for seeds with a magnifying glass, you could look for your whole life and never see one land. But if you just wait and look for flowers, you have a much better chance of inferring that a plant has landed. Probably if a seed lands you won’t notice. You might not even notice the first plant. But given a few growing seasons, you will see a whole patch of earth covered with all of that one seed’s great grandchildren. The event was rare, but its consequences grow very quickly in that fertile ground.

Now let’s return to prions. The seed is a single protein molecule mis-folding. It causes other proteins to mis fold. That means that the fertile ground upon which this seed has fallen is the cow’s brain. And the plant that grows is madness. If cow’s brains are isolated, that’s not a big deal for anyone but that cow. But if the cow’s brains are brought into proximity to other cow’s brains, then that one seed (no matter how rare) will take up the whole space eventually.

Eventually, I’d like to talk about memes on this space. Memes are like flowers and prions and seeds. Given fertile space, they spread. The consequences of that are entirely dependent on the type of meme. Some are beneficial and some are detrimental; some are slow to grow while others spread quickly. They are ideas that jump from one mind to another. As humans, we can choose the memes for which we make our minds a habitat. That is one of our greatest gifts.

More to come.

-Peter

spider silk proteins, microfluidics, and cool stuff that is small

A pair of German groups collaborated to produce an artificial spinarette. They made very small tubes (called Microfluidics by those in the business) into which they injected engineered spider silk proteins produced in bacteria. The obvious cool tings aside (e.g. arachnoweave armor) there are several interesting scientific oddities. The first is in the aggregation of protein eADF3. According to the article, at low concentrations it forms aggregates. But if you add shear flow (like forcing it through a small channel or a spinarette) it makes fibers instead of particles. That’s pretty strange.
Here’s something else. The protein aggregates in salt water under static conditions into tiny particles. These particles unfold and dissolve in pure water. The the fibers made of the same stuff in the same conditions stable in pure water. Something pretty drastic has changed about how those proteins are structured when they assemble under the shear conditions in the flow of that microfluidically confined stream. Indeed, spectroscopy shows a high beta-sheet content of the fibers, although I didn’t see anything about the beta-sheet content of the particles.
But these authors go one step further. A two part mixture of two silk proteins, both found in spiders (the above mentioned eADF3 and another, eADF4) produce a twisted fiber of higher strength and similarity to the natural product of a spider. If you’ve ever watched a nature show and seen a spider at work, you’ll know that they have to pull the silk tightly when they are spinning in order to make it strong; this explains why. The shear forces of the fluid moving through the spider’s little orifice are really important. Maybe that’s another step toward that arachnoweave armor. That and that d3o stuff (like a d3o Hat to protect your head) would make a product fit for Batman.

It’s not recombinant spider silk, but the D3O videos are worth looking at, if you have not already.

-Peter