Tag Archives: sleep

the next month's topic, stress, personal life, and a strange article about biomimetics

Dear kind reader,

Thank you for being here. This is a strange time in the life of your host, myself, Peter. I am trying to get the last data for my dissertation. I have 21 days, if I include today which is technically tomorrow. So I won’t be sleeping much in the foreseeable future. Rather than track my interests in the scientific literature, I’m going to chronicle for you the life of a Ph.D candidate in its pupal (pupil?) stages. Shortly I will metamorphose, but until then, stay tuned.

Today, I got up at 7:30 AM and went to the dentist. I got back at 3:30PM and felt a desperate need to acquire a glue stick. I wanted to stick into my notebook a printout of a procedure I wanted to run. It’s the repeat of the procedure I spend 40 hours on this long holiday weekend. And I need it to be stuck in my notebook neatly and securely. So I got a glue stick. And Coffee. The Coffee had nothing to do with sticking things in my notebook.

The 10 cups of coffee may have something to do with the violent diarrhea at 5:00, however. That and the stress.

In any case, I got the procedure into my notebook, and then I had to actually run it. I’m still running (AT 12:43 AM!) it thanks to a crappy epoxy bond. I’m also attempting to apply for a second job to pay for my impending trip to Europe. I am going to Europe to see my sweetie who will be in Germany in August. But right now I am tired and a little lonesome.

I’m running on caffeine, leftover pizza, and sheer determination.

We’ll see if I can keep this up for 21 days.

-Peter

P.S. What do dolphins, humans and bonobos have in common?

Along the leading edge of their lifting surfaces, they form Large vortices behind troughs whereas flow behind the tubercles forms straight streamlines! Check out the article at Eurekalert!

Actually, this doesn’t apply to bonobos at all.

Getting enough sleep is key, but how much is enough?

I posted about some gumption traps before, and I mentioned caffeine as one of my favorite solutions. The underlying issue, of course, is sleep. Not too long ago, I made a note of the fact that even the simplest creatures imaginable have something like sleep. Evidently, it is pretty important.

According to this article over at news.yahoo.com, most people perform best on about 7.5 hours per night. My experience is consistent with the results presented in the news bit. Too little sleep leaves me uncreative and groggy; too much and I am lethargic. There is a balance to be struck. My problem is mornings. I hate getting up. I always feel less tired when I go to sleep than I do when I wake. That makes no sense. It drives me crazy. I’ll be rearing to go at midnight, and I force myself to go to bed then have to meditate to calm down enough to fall asleep. Then I wake up 8 hours later when the alarm goes off and I fell like my world will cave in if I don’t get 4 more hours of sleep. It’s absurd.

I’ve tried polyphasic sleep (I live a 7 min walk away from my work, so I can go home to sleep if I want). I’ve tried the rolling 28 hour day. They both left me with horrific nightmares. I felt like I was on a fast track to a mental breakdown. It was not good. So I muddle along.

I have mentioned nootropics here as well. I have not tried anything except caffeine. Maybe that’s why people get into them. Matt (that other guy on this site) sent me the sleep article; he also tells me that the use of nootropics is common among pharmaceutical representatives (he used to be one). Go figure. Think of science as the Sport of the Mind, except that there’s no rule against doping. Makes me want to go get a bottle of Nerve Tonic.

-Peter

Are our fates determined by our genes? I doubt it. It’s not that simple even for worms.

I have done some work with the C. Elegans model organism. They are fun little bugs, and the PETA doesn’t get all up-in-arms when you shoot their brain with a laser. Here are some fun C. Elegans Facts:

wikimedia commons: adult caenorhabditis elegans

They are about 1 mm long at maturity
They are transparent
They have about 300 nerves
Their genome was sequenced in 1998
They can hunt down food on a plate
They have forms of memory and learning

Here are some things I have noticed: When illuminated with a blue laser, they panic and squirm all over the place. When you use a UV laser to blow up a portion of their outer cuitcle, they practically turn inside-out due to internal pressure. Some of the strains available through the WormBank have single nerve cells that express fluorescent protein, so that not only do their brains glow, but only the part you might be interested in glows.

Why are these critters cool? Well, despite being really small, they share a lot of biochemistry with humans. Their neurons function in the same way and the cellular processes that allow the worm to grow from an egg into a larva and from a larva into an adult are all analogous on a cellular level to changes in human development. But if you do an experiment on a worm, you can see what happens in a few days instead of months (rats) years (monkeys) or decades (humans). Also, there are some ethical constraints with humans that don’t apply to worms.

Here’s a new fact just released in Nature: they seem to have a sleep-like state. “Lethargus is a Caenorhabditis elegans sleep-like state” by Raizen et. al. “Conserved effects on sleep-like behaviour of homologous genes in C. elegans and Drosophila suggest a common genetic regulation of sleep-like states in arthropods and nematodes. Our results indicate that C. elegans is a suitable model system for the study of sleep regulation.”

They sleep, they eat, they learn (sort-of), they have lots of sex with themselves (they are hermaphrodites) and they make eggs. And they do it all in 3 days. And despite the fact that we know the fate of every cell in its body from birth to death – where it comes from, what it becomes and where it goes – we still don’t know how it manages most of its behavior.

I’d like to point out that this leaves very little hope for a reductionist perspective on psychology.  We know every connection of every nerve in this worm’s body and the thing is still a mystery. I wrote a post recently about how foolish it is to make sweeping assertions about genetic differences. Just to reiterate the big upshot: even in the simplest case, our understanding of the causes-and-effects that make up psychology is limited.  To think that a human being is perfectly predictable is… well… just plain dumb.

-Peter